![]() Note: A waved end on an annotation (figure 7.9) means that the annotation is torn, i.e.In spring 2015, an outbreak of porcine reproductive and respiratory syndrome (PRRS) struck Lower Austria caused by a PRRS virus (PRRSV) strain spreading rapidly among both previously PRRSV negative and vaccinated pig herds. In this way, you can quickly find a specific annotation on 8: Browsing the gene annotations on a sequence.Ĭlicking an annotation in the list will select this region on the Of the annotations of that type (see figure 7.8).įigure 7. The annotations by clicking the small button The Reset function only works for changes madeįurthermore, the Annotation types can be used to easily browse When you click OK, the color settingsĬannot be reset. They represent five different ways of specifying colors. This will display a dialog with five tabs: Swatches, HSB, HSI, RGB, and CMYK. ![]() Next to the relevant annotation type to change the color. Remove this type of annotations them from the sequence - it willīesides selecting which types of annotations that should beĭisplayed, the Annotation types group is also used to change theĬolor of the annotations on the sequence. Unchecking the checkboxes in the Annotation layout will not If you deselect the annotation types that are not relevant. Sequences with many annotations, it can be easier to get an overview Of annotations that are attached to the sequence(s) in the view. In the Annotation types group, you can choose which kinds ofĪnnotations that should be displayed. Negative strand will have an arrow pointing to the left. To see the orientation of the annotation (for DNA sequences). Displays the end of the annotation as an arrow. This means that there is varying distance between each sequence line to make room for the labels. The labels are offset so that the text of all labels is visible. The labels are displayed as flags at the beginning of the annotation. The labels are placed just to the left of the annotation. The labels are displayed above the annotations. The labels are displayed in the annotation's box. Additional information about the sequence is shown if you place the mouse cursor on the annotation and keep it still. The name of the annotation can shown as a label. This can take up a lot of space on the screen. The annotations are placed above each other with a little space between. The annotations are piled on top of each other, but they have been offset a little. The annotations are piled on top of each other. If several annotations cover the same part of a sequence, they can be spread out. The annotations are placed above the sequence and above restriction sites (only applicable for nucleotide sequences). The annotations are placed above the sequence. The residues are visible through the annotations (if you have zoomed in to 100%). The annotations are placed on the sequence. Determines whether the annotations are shown. In the Annotation layout group, you can specify how theĪnnotations should be displayed (notice that there are some minorĭifferences between the different sequence views): The annotation types can be shown by clicking on the "Annotation types" tab. 7: The annotation layout in the Side Panel. However, they all have two groupsįigure 7. The various sequence views listed in Viewing 6: An annotation showing a coding region on a genomic dna sequence. Shows an annotation displayed on a sequence.įigure 7. Candidate Division SR1 and Gracilibacteria Echinoderm Mitochondrial Flatworm Mitochondrial Ciliate Nuclear Dasycladacean Nuclear Hexamita Nuclear Mold Mitochondrial Protozoan Mitochondrial Coelenterate Mitochondrial Mycoplasma Spiroplasma Restriction enzymes database configuration.Bioinformatics explained: Multiple alignments.Restriction sites as annotation on the sequence.Selecting, sorting and filtering enzymes.Restriction site analysis from the Toolbox.Bioinformatics explained: Protein statistics.Tools for linking sequence and structure.Snapshots of the molecule visualization.Mark molecule as circular and specify starting point.Using split views to see details of the circular molecule.Export of folders and multiple elements in CLC format.Selecting which part of the view to print.Saving, removing and applying saved settings.The different options for export and import.When the program is installed: Getting started.Installation on Linux with an installer.
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